R and Shiny Resources

1. R Resources
2. Matt Dancho
3. Shiny Resources
4. Econometrics in R
5. Scraping in R
6. Leaflet
7. Reticulate
8. Heatmaps
9. Links to Related Topics

• Online learning - R Programming, Shiny, R Markdown, Data Science
• Webinars and Videos On Demand
• RStudio Essentials

• RStudio Online Books
  • R for Data Science - by Garrett Grolemund and Hadley Wickham
  • R Markdown: The Definitive Guide - by Yihui Xie, J. J. Allaire, Garrett Grolemund, 2018-12-20
  • Deep Learning with R - by Francois Chollet with J. J. Allaire
    • Online book
  • blogdown: Creating Websites with R Markdown - by Yihui Xie, Amber Thomas, Alison Presmanes Hill, 2019-01-03
  • Advanced R - by Hadley Wickham
  • R packages - by Hadley Wickham
  • Hands-On Programming with R - by Garrett Grolemund
  • Dynamic Documents with R & knitr - by Yihui Xie
• Chapman & Hall/CRC The R Series
  • Hands-On Machine Learning with R - by Bradley Boehmke & Brandon Greenwell
  • Analyzing US Census Data: Methods, Maps, and Models in R - by Kyle Walker
• United States Census Courses - Census Data with R

• R Graphics Cookbook - by Winston Chang
• A ggplot2 tutorial for Beautiful Plotting in R - by Cedrec Scherer
• Data Visualization with R - by Rob Kabacoff
• Fundamentals of Data Visualization - by Claus O. Wilke
• Tidy Modeling with R - Max Kuhn and Julia Silge, 2022-04-29
• Feature Engineering and Selection: A Practical Approach for Predictive Models - Max Kuhn and Kjell Johnson, 2019-06-21
• Interpretable Machine Learning - Christoph Molnar, 2022-03-29

• Shiny from RStudio
  • Learn Shiny
• Shiny Online Learning
• RStudio Shiny Examples
  • Example 001-hello
• AWESOME R SHINY
• Mastering Shiny - by Hadley Wickham

• Introduction to Econometrics with R - Christoph Hanck, Martin Arnold, Alexander Gerber, and Martin Schmelzer, 2024-02-13 (PDF)
• Introduction to Econometrics with R - Florian Oswald, Vincent Viers, Jean-Marc Robin, Pierre Villedieu, Gustave Kenedi, 2020-11-03
• Principles of Econometrics with R - Carter Hill, William Griffiths and Guay Lim, 4-th edition
• Applied Econometrics with R - Christian Kleiber and Achim Zeileis
• Econometrics in R - Grant V. Farnsworth, 2008-10-26 (PDF)
• Information on P-values

• rvest 1.0.2
• Package 'rvest'
• Webscraping Dynamic Websites with R
• How to Scrape Data from a Dynamic Website with R

• Leaflet for R
• Leaflet in R Tips & Tricks for Interactive Maps
• EDA with R - Section 20 Maps with leaflet
• Cartographic Boundary Files - Shapefile, U.S. Census
• GEOJSON AND KML DATA FOR THE UNITED STATES
• Best packages for making map? leaflet vs ggmap vs sf vs ...?

• R Interface to Python
• Reticulate tutorial: how to use Python in R
• Using Python with RStudio and reticulate - Video tutorial
• Using Python in R, Data Professor - Video tutorial
• How to set up Python in RStudio, Feb 19, 20121 - Video tutorial

• Package 'ComplexHeatmap' - July 29, 2021
  • ComplexHeatmap Complete Reference - Zuguang Gu, Feb 22, 2021
  • Make Interactive Complex Heatmaps in R - bioRxiv, April 6, 2021
• Package 'heatmaply' - Feb 2, 2021
  • heatmaply: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
    • Introduction to heatmaply - Feb 2, 2021
    • heatmaply Readme and Screenshot demo
  • HOW TO CREATE A BEAUTIFUL INTERACTIVE HEATMAP IN R
  • Heatmaply Annotation Legend Control #175 - Apr 30, 2018
  • heatmaply: an R package for creating interactive cluster heatmaps for online publishing - Oct 30, 2017
  • heatmaply 1.0.0 - beautiful interactive cluster heatmaps in R - Jan 9, 2020
• Package 'pheatmap'
  • Making a heatmap in R with the pheatmap package - Dave Tang's Blog, May 15, 2018
  • pheatmap_package.R - RPubs, Sep 25, 2020
  • The pheatmap function- R Charts
  • My Refuge Diary-"R: pheatmap", heat map, heatmap, clustering - Shengxin Skills Learning-R
  • High Quality Graphics in R - Modern Statistics for Modern Biology
• Other
  • Heatmap (interactive - plotly, d3heatmap, heatmaply)
  • Modern Statistics for Modern Biology- Susan Holmes, Wolfgang Huber, 1st edition (March 21, 2019)

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